Search Results for: reproducible research

Seven Years of Reproducible Research

Posted on 2015-09-28 by jcs

Christophe Pouzat has posted the slides from his talk Seven Years of Reproducible Research: From R / Sweave to Org. As the title suggests, the talk covers Pouzat’s evolution from using R and Sweave for reproducible research to using Org … Continue reading →

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Reproducible Research in the Small

Posted on 2015-06-02 by jcs

As most of you know, I’m a big fan of reproducible research and have written about it many times. I usually think of it as something you do with a large project that is going to produce one or more … Continue reading →

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Reproducible Research with Docker

Posted on 2015-03-05 by jcs

Karl Voit retweets this Prove reproducibility, waste less time @mgymrek Gentle intro to Docker for reproducible research http://t.co/Dtp9BuHqiv #openscience — Jason Stirnaman (@jastirn) February 11, 2015 that points to this post from Stacy Konkiel that, in turn, tells us to … Continue reading →

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Org Mode and Reproducible Research

Posted on 2014-11-12 by jcs

EmacsNYC has another great video up. This time, its Evan Misshula talking about Org-mode and reproducible research. Misshula is a graduate student in Criminal Justice at CUNY who does a lot of statistical research on Criminal Justice matters. Like me, … Continue reading →

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A Guide for Writing Reproducible Research with Org Mode

Posted on 2014-05-16 by jcs

Vikas Rawal has an excellent guide up at Github for writing papers with Emacs and Org Mode. He takes a reproducible research tact so it’s a great resource for learning how to produce a paper with everything in a single … Continue reading →

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Another Argument for Reproducible Research

Posted on 2014-05-02 by jcs

As you all know, I’m a big fan of reproducible research. Most people have an idealized conception of scientific research and that, by and large, it’s all about the pursuit of truth. Sadly that’s not always the case. The problem … Continue reading →

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Data Loss and Reproducible Research

Posted on 2013-12-26 by jcs

As long-time readers know, I’m a big fan of reproducible research (1, 2, 3, 4, 5, 6, 7). The aspect that I’m particularly interested in is keeping the data, software, and other supporting material together with the source for the … Continue reading →

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Ten Rules for Reproducible Research

Posted on 2013-11-30 by jcs

Those of you have been around for a while know I’m a big fan of reproducible research. I’ve written about it here, here, here, here, here, and here. Now Anton Nekrutenko, James Taylor, and Eivind Hovig have a nice article … Continue reading →

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Reproducible Research Redux

Posted on 2013-07-09 by jcs

Longtime readers know that I’m a big fan of reproducible research and, specifically, the way that Emacs and Org mode help make it possible. Here’s a very nice video presentation from SciPy2013 by John Kitchin. He describes how he writes … Continue reading →

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Medical Research Has Forfeited Our Trust

Posted on 2021-07-24 by jcs

Richard Smith over at The BMJ has a cute article that asks whether the time has come to assume medical research is frauduent until proven otherwise. I say “cute” because everyone paying attention knows that most published medical research is … Continue reading →

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